No. words: 2836; after pruning: 2756


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.7 (1,1:901)  819  0.00 0.00 0.00  BE443955As02P078G01P078G071F1_080.ab1       63   902 (2)  C BE443955As02P078G01P078G071R1_080.ab1   (0)   840     1 *
Merge:(0)    0    0.0 11.8 (2,1:905)  565  0.51 0.00 0.17  BE443955As02P078G01P078G071F1_080.ab1      314   904 (0)  C BE443955As02P078G01P078G071R1_011.ab1   (0)   593     4 *
Merge:(0)    0    0.0 9.8 (3,1:3)  423  0.00 0.00 0.00  BE443955As02P078G01P078G071R1_080.ab1      401   840 (0)  C BE443955As02P078G01P078G071F1_011.ab1   (0)   499    60 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1530 nodes

 576 str. conn. components

Path
    1    BE443955As02P078G01P078G071F1_080.ab1     1 
   14    BE443955As02P078G01P078G071F1_011.ab1    10 
   18    BE443955As02P078G01P078G071F1_080.ab1    18 
   26    BE443955As02P078G01P078G071F1_011.ab1    22 
   30    BE443955As02P078G01P078G071F1_080.ab1    30 
   34    BE443955As02P078G01P078G071F1_011.ab1    30 
   46    BE443955As02P078G01P078G071F1_080.ab1    45 
  178    BE443955As02P078G01P078G071F1_011.ab1   174 
  180    BE443955As02P078G01P078G071F1_080.ab1   179 
  228  C BE443955As02P078G01P078G071R1_080.ab1   676 
  236    BE443955As02P078G01P078G071F1_080.ab1   235 
  244  C BE443955As02P078G01P078G071R1_080.ab1   660 
  248    BE443955As02P078G01P078G071F1_080.ab1   247 
  280  C BE443955As02P078G01P078G071R1_080.ab1   624 
  284    BE443955As02P078G01P078G071F1_080.ab1   283 
  292  C BE443955As02P078G01P078G071R1_080.ab1   612 
  815  C BE443955As02P078G01P078G071R1_011.ab1    93 
  823  C BE443955As02P078G01P078G071R1_080.ab1    81 
  867  C BE443955As02P078G01P078G071R1_011.ab1    41 
  871  C BE443955As02P078G01P078G071R1_080.ab1    33 
  875  C BE443955As02P078G01P078G071R1_011.ab1    33 
  883  C BE443955As02P078G01P078G071R1_080.ab1    21 
  891  C BE443955As02P078G01P078G071R1_011.ab1    17 
Contig length: old 906, new 907

Contig length: old 907, new 907
New start: 0