No. words: 1817; after pruning: 1791


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 17.4 (1,1:818)  788  0.00 0.25 0.00  BE443955Ld01P078G01P078G071F1_056.ab1        4   818 (90)  C BE443955Ld01P078G01P078G071R1_056.ab1   (92)   817     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  404 nodes

 204 str. conn. components

Path
    1  C BE443955Ld01P078G01P078G071R1_056.ab1   909 
  117    BE443955Ld01P078G01P078G071F1_056.ab1    27 
  129  C BE443955Ld01P078G01P078G071R1_056.ab1   781 
  139    BE443955Ld01P078G01P078G071F1_056.ab1    48 
  147  C BE443955Ld01P078G01P078G071R1_056.ab1   763 
  151    BE443955Ld01P078G01P078G071F1_056.ab1    60 
  571  C BE443955Ld01P078G01P078G071R1_056.ab1   339 
  603    BE443955Ld01P078G01P078G071F1_056.ab1   512 
  719  C BE443955Ld01P078G01P078G071R1_056.ab1   191 
  815    BE443955Ld01P078G01P078G071F1_056.ab1   724 
  819  C BE443955Ld01P078G01P078G071R1_056.ab1    91 
  903    BE443955Ld01P078G01P078G071F1_056.ab1   812 
Contig length: old 998, new 999

Contig length: old 999, new 999
New start: 0