No. words: 1782; after pruning: 1756


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.7 (1,1:819)  793  0.00 0.12 0.12  BE443955Ld04P078G01P078G071F1_050.ab1        1   820 (52)  C BE443955Ld04P078G01P078G071R1_050.ab1   (90)   820     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1  C BE443955Ld04P078G01P078G071R1_050.ab1   910 
  104    BE443955Ld04P078G01P078G071F1_050.ab1    13 
  144  C BE443955Ld04P078G01P078G071R1_050.ab1   767 
  148    BE443955Ld04P078G01P078G071F1_050.ab1    57 
  180  C BE443955Ld04P078G01P078G071R1_050.ab1   731 
  184    BE443955Ld04P078G01P078G071F1_050.ab1    93 
  320  C BE443955Ld04P078G01P078G071R1_050.ab1   591 
  328    BE443955Ld04P078G01P078G071F1_050.ab1   237 
  332  C BE443955Ld04P078G01P078G071R1_050.ab1   579 
  396    BE443955Ld04P078G01P078G071F1_050.ab1   305 
  400  C BE443955Ld04P078G01P078G071R1_050.ab1   511 
  448    BE443955Ld04P078G01P078G071F1_050.ab1   357 
  484  C BE443955Ld04P078G01P078G071R1_050.ab1   427 
  492    BE443955Ld04P078G01P078G071F1_050.ab1   401 
  504  C BE443955Ld04P078G01P078G071R1_050.ab1   407 
  512    BE443955Ld04P078G01P078G071F1_050.ab1   421 
  528  C BE443955Ld04P078G01P078G071R1_050.ab1   383 
  548    BE443955Ld04P078G01P078G071F1_050.ab1   457 
  560  C BE443955Ld04P078G01P078G071R1_050.ab1   351 
  600    BE443955Ld04P078G01P078G071F1_050.ab1   509 
  612  C BE443955Ld04P078G01P078G071R1_050.ab1   299 
  624    BE443955Ld04P078G01P078G071F1_050.ab1   533 
  676  C BE443955Ld04P078G01P078G071R1_050.ab1   235 
  716    BE443955Ld04P078G01P078G071F1_050.ab1   625 
  720  C BE443955Ld04P078G01P078G071R1_050.ab1   191 
  901    BE443955Ld04P078G01P078G071F1_050.ab1   811 
Contig length: old 962, new 962

Contig length: old 962, new 962
New start: 0