No. words: 1796; after pruning: 1756


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 16.5 (1,1:819)  780  0.37 0.12 0.12  BE443955Ld07P078G01P078G071F1_075.ab1        4   820 (83)  C BE443955Ld07P078G01P078G071R1_075.ab1   (76)   817     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1  C BE443955Ld07P078G01P078G071R1_075.ab1   893 
   90    BE443955Ld07P078G01P078G071F1_075.ab1    16 
  538  C BE443955Ld07P078G01P078G071R1_075.ab1   356 
  812    BE443955Ld07P078G01P078G071F1_075.ab1   739 
  820  C BE443955Ld07P078G01P078G071R1_075.ab1    74 
  832    BE443955Ld07P078G01P078G071F1_075.ab1   759 
  836  C BE443955Ld07P078G01P078G071R1_075.ab1    58 
  844    BE443955Ld07P078G01P078G071F1_075.ab1   771 
  864  C BE443955Ld07P078G01P078G071R1_075.ab1    30 
  888    BE443955Ld07P078G01P078G071F1_075.ab1   815 
Contig length: old 976, new 976

Contig length: old 976, new 976
New start: 0