No. words: 1790; after pruning: 1764


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 16.8 (1,1:822)  795  0.12 0.12 0.00  BE443955Ld10P078G01P078G071F1_069.ab1        3   823 (64)  C BE443955Ld10P078G01P078G071R1_069.ab1   (81)   822     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1  C BE443955Ld10P078G01P078G071R1_069.ab1   903 
   91    BE443955Ld10P078G01P078G071F1_069.ab1    11 
  171  C BE443955Ld10P078G01P078G071R1_069.ab1   733 
  175    BE443955Ld10P078G01P078G071F1_069.ab1    95 
  555  C BE443955Ld10P078G01P078G071R1_069.ab1   349 
  803    BE443955Ld10P078G01P078G071F1_069.ab1   723 
  807  C BE443955Ld10P078G01P078G071R1_069.ab1    97 
  855    BE443955Ld10P078G01P078G071F1_069.ab1   775 
  866  C BE443955Ld10P078G01P078G071R1_069.ab1    38 
  898    BE443955Ld10P078G01P078G071F1_069.ab1   818 
Contig length: old 967, new 967

Contig length: old 967, new 967
New start: 0