No. words: 2623; after pruning: 2571


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.4 (1,1:992)  811  0.00 0.00 0.00  BE443955Tu01P078G01P078G071F1_069.ab1       89   915 (0)  C BE443955Tu01P078G01P078G071R1_069.ab1   (0)   905    79 *
Merge:(0)    0    0.0 9.2 (2,1:991)  405  0.00 0.00 0.00  BE443955Tu01P078G01P078G071R1_069.ab1        2   415 (490)    BE443955Tu01P078G01P078G071R1_015.ab1        1   414 (0) *
Merge:(0)    0    0.0 8.6 (3,1:12)  386  0.00 0.00 0.00  BE443955Tu01P078G01P078G071F1_069.ab1       13   401 (514)    BE443955Tu01P078G01P078G071F1_015.ab1        1   389 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       5 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1132 nodes

 335 str. conn. components

Path
    1    BE443955Tu01P078G01P078G071F1_069.ab1     1 
   28    BE443955Tu01P078G01P078G071F1_015.ab1    16 
   36    BE443955Tu01P078G01P078G071F1_069.ab1    36 
  644  C BE443955Tu01P078G01P078G071R1_069.ab1   350 
  656    BE443955Tu01P078G01P078G071F1_069.ab1   656 
  664  C BE443955Tu01P078G01P078G071R1_069.ab1   330 
  876  C BE443955Tu01P078G01P078G071R1_015.ab1   117 
  890  C BE443955Tu01P078G01P078G071R1_069.ab1   104 
  908  C BE443955Tu01P078G01P078G071R1_015.ab1    85 
  910  C BE443955Tu01P078G01P078G071R1_069.ab1    84 
  950  C BE443955Tu01P078G01P078G071R1_015.ab1    43 
  958  C BE443955Tu01P078G01P078G071R1_069.ab1    36 
  986  C BE443955Tu01P078G01P078G071R1_015.ab1     7 
Contig length: old 993, new 992

Contig length: old 992, new 992
New start: 0