No. words: 1478; after pruning: 1452


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:698)  615  1.72 0.43 0.00  BE444579As01P129C03P129C091F1_064.ab1        2   698 (42)  C BE444579As01P129C03P129C091R1_064.ab1   (38)   700     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C BE444579As01P129C03P129C091R1_064.ab1   738 
   73    BE444579As01P129C03P129C091F1_064.ab1    33 
   81  C BE444579As01P129C03P129C091R1_064.ab1   658 
   85    BE444579As01P129C03P129C091F1_064.ab1    45 
  133  C BE444579As01P129C03P129C091R1_064.ab1   606 
  141    BE444579As01P129C03P129C091F1_064.ab1   101 
  526  C BE444579As01P129C03P129C091R1_064.ab1   213 
  562    BE444579As01P129C03P129C091F1_064.ab1   522 
  570  C BE444579As01P129C03P129C091R1_064.ab1   169 
  578    BE444579As01P129C03P129C091F1_064.ab1   538 
  590  C BE444579As01P129C03P129C091R1_064.ab1   149 
  598    BE444579As01P129C03P129C091F1_064.ab1   558 
  602  C BE444579As01P129C03P129C091R1_064.ab1   137 
  610    BE444579As01P129C03P129C091F1_064.ab1   570 
  614  C BE444579As01P129C03P129C091R1_064.ab1   125 
  618    BE444579As01P129C03P129C091F1_064.ab1   578 
  666  C BE444579As01P129C03P129C091R1_064.ab1    73 
  670    BE444579As01P129C03P129C091F1_064.ab1   630 
  694  C BE444579As01P129C03P129C091R1_064.ab1    45 
  702    BE444579As01P129C03P129C091F1_064.ab1   662 
Contig length: old 779, new 780

Contig length: old 780, new 780
New start: 0