No. words: 1708; after pruning: 1668


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.7 (1,1:899)  768  0.37 0.00 0.00  BE444864At01P003E02E08F1_004.ab1       49   856 (0)  C BE444864At01P003E02E08R1_004.ab1   (0)   852    45 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  398 nodes

 201 str. conn. components

Path
    1    BE444864At01P003E02E08F1_004.ab1     1 
  396  C BE444864At01P003E02E08R1_004.ab1   505 
  408    BE444864At01P003E02E08F1_004.ab1   408 
  420  C BE444864At01P003E02E08R1_004.ab1   481 
  424    BE444864At01P003E02E08F1_004.ab1   424 
  444  C BE444864At01P003E02E08R1_004.ab1   457 
  452    BE444864At01P003E02E08F1_004.ab1   452 
  472  C BE444864At01P003E02E08R1_004.ab1   429 
  476    BE444864At01P003E02E08F1_004.ab1   476 
  496  C BE444864At01P003E02E08R1_004.ab1   405 
  532    BE444864At01P003E02E08F1_004.ab1   532 
  536  C BE444864At01P003E02E08R1_004.ab1   365 
  548    BE444864At01P003E02E08F1_004.ab1   548 
  556  C BE444864At01P003E02E08R1_004.ab1   345 
  580    BE444864At01P003E02E08F1_004.ab1   580 
  584  C BE444864At01P003E02E08R1_004.ab1   317 
Contig length: old 900, new 900

Contig length: old 900, new 900
New start: 0