No. words: 1732; after pruning: 1692


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 16.6 (1,1:903)  787  0.12 0.00 0.12  BE444864At02P003E02E08F1_008.ab1       31   857 (0)  C BE444864At02P003E02E08R1_008.ab1   (2)   873    48 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  410 nodes

 207 str. conn. components

Path
    1    BE444864At02P003E02E08F1_008.ab1     1 
  371  C BE444864At02P003E02E08R1_008.ab1   534 
  379    BE444864At02P003E02E08F1_008.ab1   379 
  435  C BE444864At02P003E02E08R1_008.ab1   470 
  439    BE444864At02P003E02E08F1_008.ab1   439 
  527  C BE444864At02P003E02E08R1_008.ab1   378 
  531    BE444864At02P003E02E08F1_008.ab1   531 
  535  C BE444864At02P003E02E08R1_008.ab1   370 
  539    BE444864At02P003E02E08F1_008.ab1   539 
  551  C BE444864At02P003E02E08R1_008.ab1   354 
  559    BE444864At02P003E02E08F1_008.ab1   559 
  595  C BE444864At02P003E02E08R1_008.ab1   310 
  603    BE444864At02P003E02E08F1_008.ab1   603 
  607  C BE444864At02P003E02E08R1_008.ab1   298 
Contig length: old 904, new 904

Contig length: old 904, new 904
New start: 0