No. words: 651; after pruning: 625


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.3 -0.3 (1,1:474)  116 10.23 0.00 0.00  BE444864Ta11P026C06P003E081F1_043.ab1      168   343 (0)  C BE444864Ta11P026C06P003E081R1_043.ab1   (0)   308   133 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.3       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  44 nodes

 24 str. conn. components

Path
    1    BE444864Ta11P026C06P003E081F1_043.ab1     1 
  233  C BE444864Ta11P026C06P003E081R1_043.ab1   243 
Contig length: old 475, new 475

Contig length: old 475, new 475
New start: 0 
S Change at: 186; seg lengths: entry 1, contig 1
S Change at: 192; seg lengths: entry 2, contig 2
S Change at: 219; seg lengths: entry 1, contig 1
S Change at: 226; seg lengths: entry 4, contig 4
S Change at: 242; seg lengths: entry 2, contig 2
S Change at: 254; seg lengths: entry 5, contig 5