No. words: 1203; after pruning: 1177


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.0 (1,1:520)  501  0.19 0.00 0.00  BE445348Ld08P078A02P078A081F1_025.ab1        4   521 (50)  C BE445348Ld08P078A02P078A081R1_025.ab1   (114)   518     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C BE445348Ld08P078A02P078A081R1_025.ab1   632 
  162    BE445348Ld08P078A02P078A081F1_025.ab1    51 
  182  C BE445348Ld08P078A02P078A081R1_025.ab1   451 
  186    BE445348Ld08P078A02P078A081F1_025.ab1    75 
  194  C BE445348Ld08P078A02P078A081R1_025.ab1   439 
  202    BE445348Ld08P078A02P078A081F1_025.ab1    91 
  210  C BE445348Ld08P078A02P078A081R1_025.ab1   423 
  478    BE445348Ld08P078A02P078A081F1_025.ab1   367 
  546  C BE445348Ld08P078A02P078A081R1_025.ab1    87 
  562    BE445348Ld08P078A02P078A081F1_025.ab1   451 
  566  C BE445348Ld08P078A02P078A081R1_025.ab1    67 
  578    BE445348Ld08P078A02P078A081F1_025.ab1   467 
  582  C BE445348Ld08P078A02P078A081R1_025.ab1    51 
  586    BE445348Ld08P078A02P078A081F1_025.ab1   475 
  597  C BE445348Ld08P078A02P078A081R1_025.ab1    36 
  609    BE445348Ld08P078A02P078A081F1_025.ab1   498 
Contig length: old 682, new 682

Contig length: old 682, new 682
New start: 0