No. words: 1101; after pruning: 1061


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 4.0 (1,1:503)  478  0.20 0.40 0.20  BE445508At01P078C02P078C081F1_021.ab1        2   502 (48)  C BE445508At01P078C02P078C081R1_021.ab1   (47)   504     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BE445508At01P078C02P078C081R1_021.ab1   551 
   97    BE445508At01P078C02P078C081F1_021.ab1    50 
  101  C BE445508At01P078C02P078C081R1_021.ab1   451 
  113    BE445508At01P078C02P078C081F1_021.ab1    66 
  125  C BE445508At01P078C02P078C081R1_021.ab1   427 
  129    BE445508At01P078C02P078C081F1_021.ab1    82 
  149  C BE445508At01P078C02P078C081R1_021.ab1   403 
  189    BE445508At01P078C02P078C081F1_021.ab1   142 
  197  C BE445508At01P078C02P078C081R1_021.ab1   355 
  205    BE445508At01P078C02P078C081F1_021.ab1   158 
  217  C BE445508At01P078C02P078C081R1_021.ab1   335 
  221    BE445508At01P078C02P078C081F1_021.ab1   174 
  225  C BE445508At01P078C02P078C081R1_021.ab1   327 
  269    BE445508At01P078C02P078C081F1_021.ab1   222 
  281  C BE445508At01P078C02P078C081R1_021.ab1   271 
  333    BE445508At01P078C02P078C081F1_021.ab1   286 
  361  C BE445508At01P078C02P078C081R1_021.ab1   191 
  381    BE445508At01P078C02P078C081F1_021.ab1   334 
  433  C BE445508At01P078C02P078C081R1_021.ab1   119 
  441    BE445508At01P078C02P078C081F1_021.ab1   394 
  445  C BE445508At01P078C02P078C081R1_021.ab1   107 
  453    BE445508At01P078C02P078C081F1_021.ab1   406 
  469  C BE445508At01P078C02P078C081R1_021.ab1    83 
  481    BE445508At01P078C02P078C081F1_021.ab1   434 
  527  C BE445508At01P078C02P078C081R1_021.ab1    25 
  535    BE445508At01P078C02P078C081F1_021.ab1   488 
Contig length: old 597, new 597

Contig length: old 597, new 597
New start: 0 
S Change at: 51; seg lengths: entry 1, contig 1