No. words: 1363; after pruning: 1323


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.5 (1,1:521)  505  0.00 0.19 0.00  BE445508Ld01P078C02P078C081F1_061.ab1        1   521 (145)  C BE445508Ld01P078C02P078C081R1_061.ab1   (174)   523     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1  C BE445508Ld01P078C02P078C081R1_061.ab1   697 
  226    BE445508Ld01P078C02P078C081F1_061.ab1    51 
  238  C BE445508Ld01P078C02P078C081R1_061.ab1   460 
  266    BE445508Ld01P078C02P078C081F1_061.ab1    91 
  278  C BE445508Ld01P078C02P078C081R1_061.ab1   420 
  326    BE445508Ld01P078C02P078C081F1_061.ab1   151 
  370  C BE445508Ld01P078C02P078C081R1_061.ab1   328 
  554    BE445508Ld01P078C02P078C081F1_061.ab1   379 
  594  C BE445508Ld01P078C02P078C081R1_061.ab1   104 
  602    BE445508Ld01P078C02P078C081F1_061.ab1   427 
  658  C BE445508Ld01P078C02P078C081R1_061.ab1    40 
  682    BE445508Ld01P078C02P078C081F1_061.ab1   507 
Contig length: old 841, new 841

Contig length: old 841, new 841
New start: 0 
S Change at: 42; seg lengths: entry 1, contig 1