No. words: 1310; after pruning: 1284


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.2 (1,1:524)  501  0.38 0.19 0.00  BE445508Ld05P078C02P078C081F1_053.ab1        2   524 (117)  C BE445508Ld05P078C02P078C081R1_053.ab1   (144)   525     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C BE445508Ld05P078C02P078C081R1_053.ab1   669 
  195    BE445508Ld05P078C02P078C081F1_053.ab1    51 
  199  C BE445508Ld05P078C02P078C081R1_053.ab1   471 
  215    BE445508Ld05P078C02P078C081F1_053.ab1    71 
  283  C BE445508Ld05P078C02P078C081R1_053.ab1   387 
  299    BE445508Ld05P078C02P078C081F1_053.ab1   155 
  339  C BE445508Ld05P078C02P078C081R1_053.ab1   331 
  403    BE445508Ld05P078C02P078C081F1_053.ab1   259 
  551  C BE445508Ld05P078C02P078C081R1_053.ab1   119 
  575    BE445508Ld05P078C02P078C081F1_053.ab1   431 
  633  C BE445508Ld05P078C02P078C081R1_053.ab1    37 
  637    BE445508Ld05P078C02P078C081F1_053.ab1   493 
  645  C BE445508Ld05P078C02P078C081R1_053.ab1    25 
  657    BE445508Ld05P078C02P078C081F1_053.ab1   513 
Contig length: old 785, new 785

Contig length: old 785, new 785
New start: 0