No. words: 1364; after pruning: 1338


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.0 (1,1:518)  498  0.00 0.19 0.19  BE445508Ld07P078C02P078C081F1_049.ab1        1   518 (175)  C BE445508Ld07P078C02P078C081R1_049.ab1   (152)   519     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C BE445508Ld07P078C02P078C081R1_049.ab1   671 
  197    BE445508Ld07P078C02P078C081F1_049.ab1    44 
  217  C BE445508Ld07P078C02P078C081R1_049.ab1   455 
  221    BE445508Ld07P078C02P078C081F1_049.ab1    68 
  229  C BE445508Ld07P078C02P078C081R1_049.ab1   443 
  233    BE445508Ld07P078C02P078C081F1_049.ab1    80 
  249  C BE445508Ld07P078C02P078C081R1_049.ab1   423 
  305    BE445508Ld07P078C02P078C081F1_049.ab1   152 
  341  C BE445508Ld07P078C02P078C081R1_049.ab1   331 
  361    BE445508Ld07P078C02P078C081F1_049.ab1   208 
  385  C BE445508Ld07P078C02P078C081R1_049.ab1   287 
  389    BE445508Ld07P078C02P078C081F1_049.ab1   236 
  413  C BE445508Ld07P078C02P078C081R1_049.ab1   259 
  465    BE445508Ld07P078C02P078C081F1_049.ab1   312 
  557  C BE445508Ld07P078C02P078C081R1_049.ab1   115 
  561    BE445508Ld07P078C02P078C081F1_049.ab1   408 
  565  C BE445508Ld07P078C02P078C081R1_049.ab1   107 
  573    BE445508Ld07P078C02P078C081F1_049.ab1   420 
  637  C BE445508Ld07P078C02P078C081R1_049.ab1    35 
  641    BE445508Ld07P078C02P078C081F1_049.ab1   488 
Contig length: old 845, new 846

Contig length: old 846, new 846
New start: 0