No. words: 1078; after pruning: 1052


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:513)  489  0.00 0.20 0.20  BE445508Tu01P078C02P078C081F1_029.ab1        8   515 (55)  C BE445508Tu01P078C02P078C081R1_029.ab1   (0)   508     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1    BE445508Tu01P078C02P078C081F1_029.ab1     1 
   11  C BE445508Tu01P078C02P078C081R1_029.ab1   505 
   32    BE445508Tu01P078C02P078C081F1_029.ab1    31 
   40  C BE445508Tu01P078C02P078C081R1_029.ab1   476 
   48    BE445508Tu01P078C02P078C081F1_029.ab1    47 
  136  C BE445508Tu01P078C02P078C081R1_029.ab1   380 
  144    BE445508Tu01P078C02P078C081F1_029.ab1   143 
  156  C BE445508Tu01P078C02P078C081R1_029.ab1   360 
  160    BE445508Tu01P078C02P078C081F1_029.ab1   159 
  188  C BE445508Tu01P078C02P078C081R1_029.ab1   328 
  196    BE445508Tu01P078C02P078C081F1_029.ab1   195 
  200  C BE445508Tu01P078C02P078C081R1_029.ab1   316 
  204    BE445508Tu01P078C02P078C081F1_029.ab1   203 
  208  C BE445508Tu01P078C02P078C081R1_029.ab1   308 
  216    BE445508Tu01P078C02P078C081F1_029.ab1   215 
  240  C BE445508Tu01P078C02P078C081R1_029.ab1   276 
  252    BE445508Tu01P078C02P078C081F1_029.ab1   251 
  268  C BE445508Tu01P078C02P078C081R1_029.ab1   248 
  272    BE445508Tu01P078C02P078C081F1_029.ab1   271 
  280  C BE445508Tu01P078C02P078C081R1_029.ab1   236 
  316    BE445508Tu01P078C02P078C081F1_029.ab1   315 
  332  C BE445508Tu01P078C02P078C081R1_029.ab1   184 
  368    BE445508Tu01P078C02P078C081F1_029.ab1   367 
  380  C BE445508Tu01P078C02P078C081R1_029.ab1   136 
  388    BE445508Tu01P078C02P078C081F1_029.ab1   387 
  392  C BE445508Tu01P078C02P078C081R1_029.ab1   124 
  440    BE445508Tu01P078C02P078C081F1_029.ab1   439 
  444  C BE445508Tu01P078C02P078C081R1_029.ab1    72 
  456    BE445508Tu01P078C02P078C081F1_029.ab1   455 
  460  C BE445508Tu01P078C02P078C081R1_029.ab1    56 
  499    BE445508Tu01P078C02P078C081F1_029.ab1   499 
  503  C BE445508Tu01P078C02P078C081R1_029.ab1    13 
  507    BE445508Tu01P078C02P078C081F1_029.ab1   507 
Contig length: old 570, new 570

Contig length: old 570, new 571
New start: 0 
I Change at: 499; seg lengths: entry 1, contig 0