No. words: 1380; after pruning: 1354


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 13.6 (1,1:649)  617  0.16 0.31 0.16  BE446087Sn26P052G03P016F091F1_062.ab1        7   650 (36)  C BE446087Sn26P052G03P016F091R1_062.ab1   (49)   645     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C BE446087Sn26P052G03P016F091R1_062.ab1   694 
   79    BE446087Sn26P052G03P016F091F1_062.ab1    34 
   87  C BE446087Sn26P052G03P016F091R1_062.ab1   608 
  103    BE446087Sn26P052G03P016F091F1_062.ab1    58 
  131  C BE446087Sn26P052G03P016F091R1_062.ab1   564 
  139    BE446087Sn26P052G03P016F091F1_062.ab1    94 
  147  C BE446087Sn26P052G03P016F091R1_062.ab1   548 
  151    BE446087Sn26P052G03P016F091F1_062.ab1   106 
  171  C BE446087Sn26P052G03P016F091R1_062.ab1   524 
  175    BE446087Sn26P052G03P016F091F1_062.ab1   130 
  179  C BE446087Sn26P052G03P016F091R1_062.ab1   516 
  199    BE446087Sn26P052G03P016F091F1_062.ab1   154 
  311  C BE446087Sn26P052G03P016F091R1_062.ab1   384 
  315    BE446087Sn26P052G03P016F091F1_062.ab1   270 
  355  C BE446087Sn26P052G03P016F091R1_062.ab1   340 
  359    BE446087Sn26P052G03P016F091F1_062.ab1   314 
  471  C BE446087Sn26P052G03P016F091R1_062.ab1   224 
  495    BE446087Sn26P052G03P016F091F1_062.ab1   450 
  511  C BE446087Sn26P052G03P016F091R1_062.ab1   184 
  547    BE446087Sn26P052G03P016F091F1_062.ab1   502 
  551  C BE446087Sn26P052G03P016F091R1_062.ab1   144 
  583    BE446087Sn26P052G03P016F091F1_062.ab1   538 
  595  C BE446087Sn26P052G03P016F091R1_062.ab1   100 
  639    BE446087Sn26P052G03P016F091F1_062.ab1   594 
  648  C BE446087Sn26P052G03P016F091R1_062.ab1    47 
  680    BE446087Sn26P052G03P016F091F1_062.ab1   635 
Contig length: old 730, new 731

Contig length: old 731, new 731
New start: 0