No. words: 1539; after pruning: 1513


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.0 (1,1:726)  704  0.00 0.14 0.00  BE446087Sn28P038A09P016F091F1_073.ab1        1   727 (43)  C BE446087Sn28P038A09P016F091R1_073.ab1   (41)   728     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  360 nodes

 182 str. conn. components

Path
    1  C BE446087Sn28P038A09P016F091R1_073.ab1   769 
   72    BE446087Sn28P038A09P016F091F1_073.ab1    30 
   76  C BE446087Sn28P038A09P016F091R1_073.ab1   694 
   80    BE446087Sn28P038A09P016F091F1_073.ab1    38 
   88  C BE446087Sn28P038A09P016F091R1_073.ab1   682 
  100    BE446087Sn28P038A09P016F091F1_073.ab1    58 
  104  C BE446087Sn28P038A09P016F091R1_073.ab1   666 
  428    BE446087Sn28P038A09P016F091F1_073.ab1   386 
  432  C BE446087Sn28P038A09P016F091R1_073.ab1   338 
  752    BE446087Sn28P038A09P016F091F1_073.ab1   710 
Contig length: old 812, new 812

Contig length: old 812, new 812
New start: 0