No. words: 1285; after pruning: 1259


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:810)  455  0.42 0.00 0.00  BE446087Sn29P052H03P016F091F1_056.ab1      200   673 (0)  C BE446087Sn29P052H03P016F091R1_056.ab1   (0)   612   139 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1    BE446087Sn29P052H03P016F091F1_056.ab1     1 
  561  C BE446087Sn29P052H03P016F091R1_056.ab1   251 
  565    BE446087Sn29P052H03P016F091F1_056.ab1   565 
  569  C BE446087Sn29P052H03P016F091R1_056.ab1   243 
  573    BE446087Sn29P052H03P016F091F1_056.ab1   573 
  581  C BE446087Sn29P052H03P016F091R1_056.ab1   231 
  601    BE446087Sn29P052H03P016F091F1_056.ab1   601 
  605  C BE446087Sn29P052H03P016F091R1_056.ab1   207 
  633    BE446087Sn29P052H03P016F091F1_056.ab1   633 
  637  C BE446087Sn29P052H03P016F091R1_056.ab1   175 
Contig length: old 811, new 811

Contig length: old 811, new 811
New start: 0