No. words: 1374; after pruning: 1348


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.2 (1,1:642)  621  0.16 0.16 0.00  BE446087Ta12P052G03P016F091F1_042.ab1        4   642 (47)  C BE446087Ta12P052G03P016F091R1_042.ab1   (45)   640     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C BE446087Ta12P052G03P016F091R1_042.ab1   685 
   59    BE446087Ta12P052G03P016F091F1_042.ab1    17 
   67  C BE446087Ta12P052G03P016F091R1_042.ab1   619 
   71    BE446087Ta12P052G03P016F091F1_042.ab1    29 
   75  C BE446087Ta12P052G03P016F091R1_042.ab1   611 
   79    BE446087Ta12P052G03P016F091F1_042.ab1    37 
   83  C BE446087Ta12P052G03P016F091R1_042.ab1   603 
   91    BE446087Ta12P052G03P016F091F1_042.ab1    49 
  119  C BE446087Ta12P052G03P016F091R1_042.ab1   567 
  123    BE446087Ta12P052G03P016F091F1_042.ab1    81 
  159  C BE446087Ta12P052G03P016F091R1_042.ab1   527 
  163    BE446087Ta12P052G03P016F091F1_042.ab1   121 
  179  C BE446087Ta12P052G03P016F091R1_042.ab1   507 
  183    BE446087Ta12P052G03P016F091F1_042.ab1   141 
  323  C BE446087Ta12P052G03P016F091R1_042.ab1   363 
  327    BE446087Ta12P052G03P016F091F1_042.ab1   285 
  431  C BE446087Ta12P052G03P016F091R1_042.ab1   255 
  443    BE446087Ta12P052G03P016F091F1_042.ab1   401 
  475  C BE446087Ta12P052G03P016F091R1_042.ab1   211 
  487    BE446087Ta12P052G03P016F091F1_042.ab1   445 
  539  C BE446087Ta12P052G03P016F091R1_042.ab1   147 
  547    BE446087Ta12P052G03P016F091F1_042.ab1   505 
  555  C BE446087Ta12P052G03P016F091R1_042.ab1   131 
  563    BE446087Ta12P052G03P016F091F1_042.ab1   521 
  575  C BE446087Ta12P052G03P016F091R1_042.ab1   111 
  579    BE446087Ta12P052G03P016F091F1_042.ab1   537 
  583  C BE446087Ta12P052G03P016F091R1_042.ab1   103 
  587    BE446087Ta12P052G03P016F091F1_042.ab1   545 
  603  C BE446087Ta12P052G03P016F091R1_042.ab1    83 
  619    BE446087Ta12P052G03P016F091F1_042.ab1   577 
  631  C BE446087Ta12P052G03P016F091R1_042.ab1    55 
  635    BE446087Ta12P052G03P016F091F1_042.ab1   593 
Contig length: old 731, new 731

Contig length: old 731, new 731
New start: 0