No. words: 1009; after pruning: 983


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -4.1 -4.1 (1,1:447)  288  7.11 0.53 0.00  BE446403Ld08P078D02P078D081F1_079.ab1        1   380 (0)  C BE446403Ld08P078D02P078D081R1_079.ab1   (180)   449    68 *
  Worst pair: offset 1 
LLR breakdown: discreps: -12.0 (<20 part: -10.0 (#=28), >20:-2.0 (#=1); in HQ: -12.0, out HQ 0.0), match: 7.9  total: -4.1  288  7.11 0.53 0.00  BE446403Ld08P078D02P078D081F1_079.ab1        1   380 (0)  C BE446403Ld08P078D02P078D081R1_079.ab1   (180)   449    68 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.1       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  122 nodes

 63 str. conn. components

Path
    1  C BE446403Ld08P078D02P078D081R1_079.ab1   629 
Contig length: old 629, new 629

Contig length: old 629, new 629
New start: 0