No. words: 487; after pruning: 461


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -4.4 -4.4 (1,1:243)  120  9.25 0.00 0.58  BE446403Td05P078D02P108B031F1_043.ab1        1   173 (0)  C BE446403Td05P078D02P108B031R1_043.ab1   (71)   243    72 *
  Worst pair: offset 1 
LLR breakdown: discreps: -7.9 (<20 part: -7.9 (#=17), >20:0.0 (#=0); in HQ: -7.9, out HQ 0.0), match: 3.5  total: -4.4  120  9.25 0.00 0.58  BE446403Td05P078D02P108B031F1_043.ab1        1   173 (0)  C BE446403Td05P078D02P108B031R1_043.ab1   (71)   243    72 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.4       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  52 nodes

 28 str. conn. components

Path
    1  C BE446403Td05P078D02P108B031R1_043.ab1   314 
Contig length: old 314, new 314

Contig length: old 314, new 314
New start: 0