No. words: 1547; after pruning: 1508


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:477)  445  0.21 0.21 0.21  BE446628As02P016G03G09F1_089.ab1        1   478 (35)  C BE446628As02P016G03G09R1_089.scf.scf   (39)   478     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C BE446628As02P016G03G09R1_089.scf.scf   517 
  489    BE446628As02P016G03G09F1_089.ab1   449 
  499  C BE446628As02P016G03G09R1_089.scf.scf    20 
  515    BE446628As02P016G03G09F1_089.ab1   475 
Contig length: old 552, new 553

Contig length: old 553, new 553
New start: 0