No. words: 1773; after pruning: 1734


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:483)  442  0.83 0.21 0.21  BE446628Ld04P016G03G09F1_092.ab1        1   484 (25)  C BE446628Ld04P016G03G09R1_092.scf.scf   (148)   484     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C BE446628Ld04P016G03G09R1_092.scf.scf   632 
  629    BE446628Ld04P016G03G09F1_092.ab1   481 
Contig length: old 657, new 657

Contig length: old 657, new 658
New start: 0 
I Change at: 614; seg lengths: entry 1, contig 0