No. words: 1688; after pruning: 1621


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:470)  424  1.27 0.21 0.21  BE446628Ld05P016G03G09F1_090.ab1        1   471 (103)  C BE446628Ld05P016G03G09R1_090.scf.scf   (86)   471     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C BE446628Ld05P016G03G09R1_090.scf.scf   557 
  104    BE446628Ld05P016G03G09F1_090.ab1    17 
  115  C BE446628Ld05P016G03G09R1_090.scf.scf   443 
  182    BE446628Ld05P016G03G09F1_090.ab1    96 
  205  C BE446628Ld05P016G03G09R1_090.scf.scf   353 
  553    BE446628Ld05P016G03G09F1_090.ab1   467 
Contig length: old 660, new 660

Contig length: old 660, new 660
New start: 0