No. words: 1373; after pruning: 1334


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.5 (1,1:466)  128  3.18 0.64 0.00  BE446628Ld07P016G03G09F1_086.ab1        1   157 (0)  C BE446628Ld07P016G03G09R1_086.scf.scf   (140)   468   311 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  68 nodes

 36 str. conn. components

Path
    1  C BE446628Ld07P016G03G09R1_086.scf.scf   608 
Contig length: old 608, new 608

Contig length: old 608, new 608
New start: 0