No. words: 1099; after pruning: 1073


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:464)  454  0.00 0.00 0.22  BE471045Ld06P067F01P067F071F1_002.ab1        1   465 (66)  C BE471045Ld06P067F01P067F071R1_002.ab1   (104)   464     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C BE471045Ld06P067F01P067F071R1_002.ab1   568 
  116    BE471045Ld06P067F01P067F071F1_002.ab1    12 
  120  C BE471045Ld06P067F01P067F071R1_002.ab1   449 
  124    BE471045Ld06P067F01P067F071F1_002.ab1    20 
  148  C BE471045Ld06P067F01P067F071R1_002.ab1   421 
  160    BE471045Ld06P067F01P067F071F1_002.ab1    56 
  164  C BE471045Ld06P067F01P067F071R1_002.ab1   405 
  168    BE471045Ld06P067F01P067F071F1_002.ab1    64 
  192  C BE471045Ld06P067F01P067F071R1_002.ab1   377 
  200    BE471045Ld06P067F01P067F071F1_002.ab1    96 
  204  C BE471045Ld06P067F01P067F071R1_002.ab1   365 
  208    BE471045Ld06P067F01P067F071F1_002.ab1   104 
  248  C BE471045Ld06P067F01P067F071R1_002.ab1   321 
  256    BE471045Ld06P067F01P067F071F1_002.ab1   152 
  260  C BE471045Ld06P067F01P067F071R1_002.ab1   309 
  368    BE471045Ld06P067F01P067F071F1_002.ab1   264 
  388  C BE471045Ld06P067F01P067F071R1_002.ab1   181 
  420    BE471045Ld06P067F01P067F071F1_002.ab1   316 
  448  C BE471045Ld06P067F01P067F071R1_002.ab1   121 
  460    BE471045Ld06P067F01P067F071F1_002.ab1   356 
  468  C BE471045Ld06P067F01P067F071R1_002.ab1   101 
  476    BE471045Ld06P067F01P067F071F1_002.ab1   372 
  480  C BE471045Ld06P067F01P067F071R1_002.ab1    89 
  492    BE471045Ld06P067F01P067F071F1_002.ab1   388 
  496  C BE471045Ld06P067F01P067F071R1_002.ab1    73 
  504    BE471045Ld06P067F01P067F071F1_002.ab1   400 
  544  C BE471045Ld06P067F01P067F071R1_002.ab1    25 
  548    BE471045Ld06P067F01P067F071F1_002.ab1   444 
Contig length: old 634, new 635

Contig length: old 635, new 635
New start: 0