No. words: 1138; after pruning: 1098


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:418)  409  0.00 0.00 0.24  BE471274Ld02P067G01P067G071F1_029.ab1        1   419 (174)  C BE471274Ld02P067G01P067G071R1_029.ab1   (127)   418     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C BE471274Ld02P067G01P067G071R1_029.ab1   545 
  159    BE471274Ld02P067G01P067G071F1_029.ab1    32 
  167  C BE471274Ld02P067G01P067G071R1_029.ab1   379 
  179    BE471274Ld02P067G01P067G071F1_029.ab1    52 
  203  C BE471274Ld02P067G01P067G071R1_029.ab1   343 
  219    BE471274Ld02P067G01P067G071F1_029.ab1    92 
  231  C BE471274Ld02P067G01P067G071R1_029.ab1   315 
  259    BE471274Ld02P067G01P067G071F1_029.ab1   132 
  287  C BE471274Ld02P067G01P067G071R1_029.ab1   259 
  307    BE471274Ld02P067G01P067G071F1_029.ab1   180 
  319  C BE471274Ld02P067G01P067G071R1_029.ab1   227 
  323    BE471274Ld02P067G01P067G071F1_029.ab1   196 
  327  C BE471274Ld02P067G01P067G071R1_029.ab1   219 
  331    BE471274Ld02P067G01P067G071F1_029.ab1   204 
  351  C BE471274Ld02P067G01P067G071R1_029.ab1   195 
  363    BE471274Ld02P067G01P067G071F1_029.ab1   236 
  379  C BE471274Ld02P067G01P067G071R1_029.ab1   167 
  387    BE471274Ld02P067G01P067G071F1_029.ab1   260 
  403  C BE471274Ld02P067G01P067G071R1_029.ab1   143 
  423    BE471274Ld02P067G01P067G071F1_029.ab1   296 
  435  C BE471274Ld02P067G01P067G071R1_029.ab1   111 
  443    BE471274Ld02P067G01P067G071F1_029.ab1   316 
  447  C BE471274Ld02P067G01P067G071R1_029.ab1    99 
  451    BE471274Ld02P067G01P067G071F1_029.ab1   324 
  455  C BE471274Ld02P067G01P067G071R1_029.ab1    91 
  459    BE471274Ld02P067G01P067G071F1_029.ab1   332 
  483  C BE471274Ld02P067G01P067G071R1_029.ab1    63 
  487    BE471274Ld02P067G01P067G071F1_029.ab1   360 
  511  C BE471274Ld02P067G01P067G071R1_029.ab1    35 
  523    BE471274Ld02P067G01P067G071F1_029.ab1   396 
Contig length: old 719, new 720

Contig length: old 720, new 720
New start: 0 
S Change at: 657; seg lengths: entry 1, contig 1