No. words: 1043; after pruning: 1017


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:418)  409  0.00 0.00 0.24  BE471274Ld08P067G01P067G071F1_017.ab1        1   419 (146)  C BE471274Ld08P067G01P067G071R1_017.ab1   (60)   418     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C BE471274Ld08P067G01P067G071R1_017.ab1   478 
   76    BE471274Ld08P067G01P067G071F1_017.ab1    16 
   84  C BE471274Ld08P067G01P067G071R1_017.ab1   395 
   88    BE471274Ld08P067G01P067G071F1_017.ab1    28 
  140  C BE471274Ld08P067G01P067G071R1_017.ab1   339 
  144    BE471274Ld08P067G01P067G071F1_017.ab1    84 
  148  C BE471274Ld08P067G01P067G071R1_017.ab1   331 
  156    BE471274Ld08P067G01P067G071F1_017.ab1    96 
  160  C BE471274Ld08P067G01P067G071R1_017.ab1   319 
  164    BE471274Ld08P067G01P067G071F1_017.ab1   104 
  172  C BE471274Ld08P067G01P067G071R1_017.ab1   307 
  176    BE471274Ld08P067G01P067G071F1_017.ab1   116 
  180  C BE471274Ld08P067G01P067G071R1_017.ab1   299 
  184    BE471274Ld08P067G01P067G071F1_017.ab1   124 
  192  C BE471274Ld08P067G01P067G071R1_017.ab1   287 
  200    BE471274Ld08P067G01P067G071F1_017.ab1   140 
  220  C BE471274Ld08P067G01P067G071R1_017.ab1   259 
  240    BE471274Ld08P067G01P067G071F1_017.ab1   180 
  264  C BE471274Ld08P067G01P067G071R1_017.ab1   215 
  272    BE471274Ld08P067G01P067G071F1_017.ab1   212 
  308  C BE471274Ld08P067G01P067G071R1_017.ab1   171 
  320    BE471274Ld08P067G01P067G071F1_017.ab1   260 
  328  C BE471274Ld08P067G01P067G071R1_017.ab1   151 
  368    BE471274Ld08P067G01P067G071F1_017.ab1   308 
  380  C BE471274Ld08P067G01P067G071R1_017.ab1    99 
  384    BE471274Ld08P067G01P067G071F1_017.ab1   324 
  388  C BE471274Ld08P067G01P067G071R1_017.ab1    91 
  392    BE471274Ld08P067G01P067G071F1_017.ab1   332 
  412  C BE471274Ld08P067G01P067G071R1_017.ab1    67 
  420    BE471274Ld08P067G01P067G071F1_017.ab1   360 
  424  C BE471274Ld08P067G01P067G071R1_017.ab1    55 
  428    BE471274Ld08P067G01P067G071F1_017.ab1   368 
  440  C BE471274Ld08P067G01P067G071R1_017.ab1    39 
  452    BE471274Ld08P067G01P067G071F1_017.ab1   392 
Contig length: old 624, new 625

Contig length: old 625, new 625
New start: 0