No. words: 1320; after pruning: 1294


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 12.1 (1,1:612)  587  0.49 0.00 0.00  BE488432Tu02P129A04P129A101F1_076.ab1        5   613 (58)  C BE488432Tu02P129A04P129A101R1_076.ab1   (40)   609     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C BE488432Tu02P129A04P129A101R1_076.ab1   649 
  117    BE488432Tu02P129A04P129A101F1_076.ab1    81 
  121  C BE488432Tu02P129A04P129A101R1_076.ab1   529 
  125    BE488432Tu02P129A04P129A101F1_076.ab1    89 
  129  C BE488432Tu02P129A04P129A101R1_076.ab1   521 
  193    BE488432Tu02P129A04P129A101F1_076.ab1   157 
  201  C BE488432Tu02P129A04P129A101R1_076.ab1   449 
  221    BE488432Tu02P129A04P129A101F1_076.ab1   185 
Contig length: old 707, new 707

Contig length: old 707, new 707
New start: 0