No. words: 2094; after pruning: 2016


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:-14)  288  0.67 0.00 0.00  BE488609At01P103B04P103B101F1_066.ab1        1   297 (0)    BE488609At01P103B04P103B101F1_086.ab1       15   311 (80) *
Merge:(0)    0    0.0 3.8 (2,1:224)  207  1.33 0.44 0.00  BE488609At01P103B04P103B101F1_066.ab1        1   225 (72)  C BE488609At01P103B04P103B101R1_066.ab1   (3)   226     1 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      3
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       1 
  1       2 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (3,1:-15)  390  0.00 0.00 0.00  BE488609At01P103B04P103B101F1_086.ab1        1   391 (0)    BE488609At01P103B04P103B101F1_080.ab1        2   392 (1) *
Merge:(0)    5    0.0 6.8 (1,1:4)  373  0.52 0.26 0.00  BE488609At01P103B04P103B101R1_086.ab1       11   394 (0)    BE488609At01P103B04P103B101R1_080.ab1        6   390 (0) *
Merge:(0)    0    0.0 5.6 (4,2:325)  284  0.67 0.34 0.00  BE488609At01P103B04P103B101F1_066.ab1        1   297 (0)  C BE488609At01P103B04P103B101R1_080.ab1   (67)   323    26 *

Pass: 3
#reads  #contigs (not counting singlets)
    6      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       2        0
 5       1        0

Offset
  0       8 
  1       4 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    6      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    6    1

Chimera merges: 


Contig 1:  2086 nodes

 323 str. conn. components

Path
    1  C BE488609At01P103B04P103B101R1_086.ab1   394 
    4  C BE488609At01P103B04P103B101R1_080.ab1   387 
    8  C BE488609At01P103B04P103B101R1_086.ab1   387 
   16  C BE488609At01P103B04P103B101R1_080.ab1   375 
   86  C BE488609At01P103B04P103B101R1_086.ab1   309 
  203    BE488609At01P103B04P103B101F1_066.ab1   135 
  243    BE488609At01P103B04P103B101F1_086.ab1   189 
  251  C BE488609At01P103B04P103B101R1_080.ab1   140 
  262    BE488609At01P103B04P103B101F1_086.ab1   208 
  323    BE488609At01P103B04P103B101F1_080.ab1   270 
  434    BE488609At01P103B04P103B101F1_086.ab1   380 
  442    BE488609At01P103B04P103B101F1_080.ab1   389 
Contig length: old 446, new 446

Contig length: old 446, new 446
New start: 0