No. words: 1327; after pruning: 1301


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.2 (1,1:501)  490  0.00 0.20 0.20  BE488609Ld02P103B04P103B101F2_070.ab1        2   502 (149)  C BE488609Ld02P103B04P103B101R2_070.ab1   (175)   501     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C BE488609Ld02P103B04P103B101R2_070.ab1   676 
  237    BE488609Ld02P103B04P103B101F2_070.ab1    62 
  241  C BE488609Ld02P103B04P103B101R2_070.ab1   436 
  245    BE488609Ld02P103B04P103B101F2_070.ab1    70 
  257  C BE488609Ld02P103B04P103B101R2_070.ab1   420 
  289    BE488609Ld02P103B04P103B101F2_070.ab1   114 
  297  C BE488609Ld02P103B04P103B101R2_070.ab1   380 
  321    BE488609Ld02P103B04P103B101F2_070.ab1   146 
  369  C BE488609Ld02P103B04P103B101R2_070.ab1   308 
  377    BE488609Ld02P103B04P103B101F2_070.ab1   202 
  381  C BE488609Ld02P103B04P103B101R2_070.ab1   296 
  385    BE488609Ld02P103B04P103B101F2_070.ab1   210 
  413  C BE488609Ld02P103B04P103B101R2_070.ab1   264 
  449    BE488609Ld02P103B04P103B101F2_070.ab1   274 
Contig length: old 825, new 826

Contig length: old 826, new 826
New start: 0