No. words: 1249; after pruning: 1223


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.8 (1,1:501)  490  0.00 0.20 0.20  BE488609Ld05P103B04P103B101F2_095.ab1        2   502 (150)  C BE488609Ld05P103B04P103B101R2_095.ab1   (96)   501     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C BE488609Ld05P103B04P103B101R2_095.ab1   597 
  166    BE488609Ld05P103B04P103B101F2_095.ab1    70 
  170  C BE488609Ld05P103B04P103B101R2_095.ab1   428 
  198    BE488609Ld05P103B04P103B101F2_095.ab1   102 
  206  C BE488609Ld05P103B04P103B101R2_095.ab1   392 
  238    BE488609Ld05P103B04P103B101F2_095.ab1   142 
  286  C BE488609Ld05P103B04P103B101R2_095.ab1   312 
  306    BE488609Ld05P103B04P103B101F2_095.ab1   210 
  322  C BE488609Ld05P103B04P103B101R2_095.ab1   276 
  374    BE488609Ld05P103B04P103B101F2_095.ab1   278 
  418  C BE488609Ld05P103B04P103B101R2_095.ab1   180 
  454    BE488609Ld05P103B04P103B101F2_095.ab1   358 
  462  C BE488609Ld05P103B04P103B101R2_095.ab1   136 
  470    BE488609Ld05P103B04P103B101F2_095.ab1   374 
Contig length: old 747, new 748

Contig length: old 748, new 748
New start: 0