No. words: 1331; after pruning: 1305


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.3 (1,1:499)  488  0.00 0.20 0.20  BE488609Ld07P103B04P103B101F2_091.ab1        2   500 (149)  C BE488609Ld07P103B04P103B101R2_091.ab1   (183)   499     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C BE488609Ld07P103B04P103B101R2_091.ab1   682 
  245    BE488609Ld07P103B04P103B101F2_091.ab1    62 
  261  C BE488609Ld07P103B04P103B101R2_091.ab1   422 
  285    BE488609Ld07P103B04P103B101F2_091.ab1   102 
  289  C BE488609Ld07P103B04P103B101R2_091.ab1   394 
  313    BE488609Ld07P103B04P103B101F2_091.ab1   130 
  321  C BE488609Ld07P103B04P103B101R2_091.ab1   362 
  337    BE488609Ld07P103B04P103B101F2_091.ab1   154 
  341  C BE488609Ld07P103B04P103B101R2_091.ab1   342 
  349    BE488609Ld07P103B04P103B101F2_091.ab1   166 
  373  C BE488609Ld07P103B04P103B101R2_091.ab1   310 
  381    BE488609Ld07P103B04P103B101F2_091.ab1   198 
  389  C BE488609Ld07P103B04P103B101R2_091.ab1   294 
  413    BE488609Ld07P103B04P103B101F2_091.ab1   230 
  437  C BE488609Ld07P103B04P103B101R2_091.ab1   246 
  441    BE488609Ld07P103B04P103B101F2_091.ab1   258 
  445  C BE488609Ld07P103B04P103B101R2_091.ab1   238 
  461    BE488609Ld07P103B04P103B101F2_091.ab1   278 
  493  C BE488609Ld07P103B04P103B101R2_091.ab1   190 
  497    BE488609Ld07P103B04P103B101F2_091.ab1   314 
  517  C BE488609Ld07P103B04P103B101R2_091.ab1   166 
  525    BE488609Ld07P103B04P103B101F2_091.ab1   342 
Contig length: old 831, new 832

Contig length: old 832, new 832
New start: 0