No. words: 1310; after pruning: 1284


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.4 (1,1:488)  482  0.00 0.21 0.00  BE488609Ld12P103B04P103B101F1_088.ab1        3   489 (162)  C BE488609Ld12P103B04P103B101R1_088.ab1   (171)   488     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C BE488609Ld12P103B04P103B101R1_088.ab1   659 
  317    BE488609Ld12P103B04P103B101F1_088.ab1   147 
  321  C BE488609Ld12P103B04P103B101R1_088.ab1   339 
  325    BE488609Ld12P103B04P103B101F1_088.ab1   155 
  337  C BE488609Ld12P103B04P103B101R1_088.ab1   323 
  357    BE488609Ld12P103B04P103B101F1_088.ab1   187 
  365  C BE488609Ld12P103B04P103B101R1_088.ab1   295 
  425    BE488609Ld12P103B04P103B101F1_088.ab1   255 
  469  C BE488609Ld12P103B04P103B101R1_088.ab1   191 
  485    BE488609Ld12P103B04P103B101F1_088.ab1   315 
  501  C BE488609Ld12P103B04P103B101R1_088.ab1   159 
  529    BE488609Ld12P103B04P103B101F1_088.ab1   359 
  533  C BE488609Ld12P103B04P103B101R1_088.ab1   127 
  537    BE488609Ld12P103B04P103B101F1_088.ab1   367 
  569  C BE488609Ld12P103B04P103B101R1_088.ab1    91 
  573    BE488609Ld12P103B04P103B101F1_088.ab1   403 
Contig length: old 821, new 821

Contig length: old 821, new 821
New start: 0