No. words: 1327; after pruning: 1301


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.4 (1,1:503)  491  0.00 0.20 0.20  BE488609Ld13P103B04P103B101F1_086.ab1        4   504 (177)  C BE488609Ld13P103B04P103B101R1_086.ab1   (145)   501     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C BE488609Ld13P103B04P103B101R1_086.ab1   646 
  319    BE488609Ld13P103B04P103B101F1_086.ab1   176 
  347  C BE488609Ld13P103B04P103B101R1_086.ab1   300 
  395    BE488609Ld13P103B04P103B101F1_086.ab1   252 
  407  C BE488609Ld13P103B04P103B101R1_086.ab1   240 
  427    BE488609Ld13P103B04P103B101F1_086.ab1   284 
  439  C BE488609Ld13P103B04P103B101R1_086.ab1   208 
  463    BE488609Ld13P103B04P103B101F1_086.ab1   320 
  479  C BE488609Ld13P103B04P103B101R1_086.ab1   168 
  487    BE488609Ld13P103B04P103B101F1_086.ab1   344 
  495  C BE488609Ld13P103B04P103B101R1_086.ab1   152 
  499    BE488609Ld13P103B04P103B101F1_086.ab1   356 
  511  C BE488609Ld13P103B04P103B101R1_086.ab1   136 
  519    BE488609Ld13P103B04P103B101F1_086.ab1   376 
  543  C BE488609Ld13P103B04P103B101R1_086.ab1   104 
  547    BE488609Ld13P103B04P103B101F1_086.ab1   404 
Contig length: old 823, new 824

Contig length: old 824, new 824
New start: 0