No. words: 1293; after pruning: 1267


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 6.1 (1,1:502)  490  0.00 0.20 0.20  BE488609Ld18P103B04P103B101F1_028.ab1        3   503 (163)  C BE488609Ld18P103B04P103B101R1_028.ab1   (126)   501     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C BE488609Ld18P103B04P103B101R1_028.ab1   627 
  256    BE488609Ld18P103B04P103B101F1_028.ab1   131 
  260  C BE488609Ld18P103B04P103B101R1_028.ab1   368 
  272    BE488609Ld18P103B04P103B101F1_028.ab1   147 
  288  C BE488609Ld18P103B04P103B101R1_028.ab1   340 
  336    BE488609Ld18P103B04P103B101F1_028.ab1   211 
  556  C BE488609Ld18P103B04P103B101R1_028.ab1    72 
  560    BE488609Ld18P103B04P103B101F1_028.ab1   435 
Contig length: old 790, new 791

Contig length: old 791, new 791
New start: 0