No. words: 1280; after pruning: 1240


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.7 (1,1:505)  491  0.20 0.40 0.20  BE488609Ld24P103B04P103B101F1_047.ab1        1   506 (147)  C BE488609Ld24P103B04P103B101R1_047.ab1   (120)   507     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C BE488609Ld24P103B04P103B101R1_047.ab1   627 
  228    BE488609Ld24P103B04P103B101F1_047.ab1   106 
  236  C BE488609Ld24P103B04P103B101R1_047.ab1   392 
  252    BE488609Ld24P103B04P103B101F1_047.ab1   130 
  500  C BE488609Ld24P103B04P103B101R1_047.ab1   128 
  516    BE488609Ld24P103B04P103B101F1_047.ab1   394 
  556  C BE488609Ld24P103B04P103B101R1_047.ab1    72 
  568    BE488609Ld24P103B04P103B101F1_047.ab1   446 
Contig length: old 774, new 775

Contig length: old 775, new 775
New start: 0 
S Change at: 134; seg lengths: entry 1, contig 1