No. words: 1928; after pruning: 1863


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 4.6 (1,1:-102)  226  0.43 0.00 0.00  BE488609Tu01P103B04P103B101R1_074.ab1        1   233 (0)    BE488609Tu01P103B04P103B101R1_072.ab1      103   335 (56) *
Merge:(0)    0    0.0 4.5 (2,1:224)  252  4.36 0.00 0.34  BE488609Tu01P103B04P103B101R1_072.ab1       31   328 (63)  C BE488609Tu01P103B04P103B101F1_074.ab1   (0)   297     1 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.5 (3,1:-102)  367  0.77 0.26 0.51  BE488609Tu01P103B04P103B101R1_072.ab1        1   391 (0)    BE488609Tu01P103B04P103B101R1_094.ab1        1   390 (221) *
Merge:(0)    0    0.0 4.9 (4,1:242)  256  4.38 0.00 0.00  BE488609Tu01P103B04P103B101F1_074.ab1        1   297 (0)    BE488609Tu01P103B04P103B101F1_072.ab1       19   315 (81) *

Pass: 3
#reads  #contigs (not counting singlets)
    5      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       4 
  1       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    5      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    5    1

Chimera merges: 


Contig 1:  1286 nodes

 280 str. conn. components

Path
    1  C BE488609Tu01P103B04P103B101F1_072.ab1   396 
  175    BE488609Tu01P103B04P103B101R1_072.ab1   124 
  179  C BE488609Tu01P103B04P103B101F1_072.ab1   218 
  188    BE488609Tu01P103B04P103B101R1_094.ab1   136 
  191  C BE488609Tu01P103B04P103B101F1_074.ab1   188 
  199    BE488609Tu01P103B04P103B101R1_072.ab1   148 
  202  C BE488609Tu01P103B04P103B101F1_072.ab1   195 
  233    BE488609Tu01P103B04P103B101R1_072.ab1   182 
  236  C BE488609Tu01P103B04P103B101F1_072.ab1   161 
  246    BE488609Tu01P103B04P103B101R1_094.ab1   194 
  248    BE488609Tu01P103B04P103B101R1_072.ab1   197 
  350  C BE488609Tu01P103B04P103B101F1_072.ab1    47 
  352    BE488609Tu01P103B04P103B101R1_072.ab1   301 
  353    BE488609Tu01P103B04P103B101R1_094.ab1   301 
  358    BE488609Tu01P103B04P103B101R1_072.ab1   307 
  438    BE488609Tu01P103B04P103B101R1_094.ab1   386 
Contig length: old 662, new 663

Contig length: old 663, new 663
New start: 0