No. words: 1131; after pruning: 1105


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:501)  490  0.60 0.00 0.00  BE489244Sn26P016F04P038F101F1_086.ab1        1   502 (62)  C BE489244Sn26P016F04P038F101R1_086.ab1   (65)   502     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BE489244Sn26P016F04P038F101R1_086.ab1   567 
  276    BE489244Sn26P016F04P038F101F1_086.ab1   211 
  291  C BE489244Sn26P016F04P038F101R1_086.ab1   277 
  427    BE489244Sn26P016F04P038F101F1_086.ab1   362 
  431  C BE489244Sn26P016F04P038F101R1_086.ab1   137 
  471    BE489244Sn26P016F04P038F101F1_086.ab1   406 
  487  C BE489244Sn26P016F04P038F101R1_086.ab1    81 
  499    BE489244Sn26P016F04P038F101F1_086.ab1   434 
  511  C BE489244Sn26P016F04P038F101R1_086.ab1    57 
  551    BE489244Sn26P016F04P038F101F1_086.ab1   486 
Contig length: old 629, new 629

Contig length: old 629, new 629
New start: 0