No. words: 1149; after pruning: 1123


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 9.8 (1,1:520)  492  0.98 0.00 0.00  BE489244Ta20P016F04P038F101F1_083.ab1        1   510 (61)  C BE489244Ta20P016F04P038F101R1_083.ab1   (57)   521    12 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BE489244Ta20P016F04P038F101R1_083.ab1   578 
  273    BE489244Ta20P016F04P038F101F1_083.ab1   216 
  286  C BE489244Ta20P016F04P038F101R1_083.ab1   293 
  456    BE489244Ta20P016F04P038F101F1_083.ab1   399 
  468  C BE489244Ta20P016F04P038F101R1_083.ab1   111 
  472    BE489244Ta20P016F04P038F101F1_083.ab1   415 
  480  C BE489244Ta20P016F04P038F101R1_083.ab1    99 
  484    BE489244Ta20P016F04P038F101F1_083.ab1   427 
  488  C BE489244Ta20P016F04P038F101R1_083.ab1    91 
  512    BE489244Ta20P016F04P038F101F1_083.ab1   455 
  520  C BE489244Ta20P016F04P038F101R1_083.ab1    59 
  524    BE489244Ta20P016F04P038F101F1_083.ab1   467 
  532  C BE489244Ta20P016F04P038F101R1_083.ab1    47 
  552    BE489244Ta20P016F04P038F101F1_083.ab1   495 
Contig length: old 628, new 628

Contig length: old 628, new 628
New start: 0