No. words: 1262; after pruning: 1236


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 12.3 (1,1:582)  572  0.00 0.00 0.00  BE489326Sn25P088G12P034G031F1_055.ab1        1   579 (53)  C BE489326Sn25P088G12P034G031R1_055.ab1   (47)   583     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C BE489326Sn25P088G12P034G031R1_055.ab1   630 
  519    BE489326Sn25P088G12P034G031F1_055.ab1   472 
  527  C BE489326Sn25P088G12P034G031R1_055.ab1   104 
  535    BE489326Sn25P088G12P034G031F1_055.ab1   488 
  539  C BE489326Sn25P088G12P034G031R1_055.ab1    92 
  551    BE489326Sn25P088G12P034G031F1_055.ab1   504 
  559  C BE489326Sn25P088G12P034G031R1_055.ab1    72 
  575    BE489326Sn25P088G12P034G031F1_055.ab1   528 
  591  C BE489326Sn25P088G12P034G031R1_055.ab1    40 
  603    BE489326Sn25P088G12P034G031F1_055.ab1   556 
  607  C BE489326Sn25P088G12P034G031R1_055.ab1    24 
  615    BE489326Sn25P088G12P034G031F1_055.ab1   568 
Contig length: old 679, new 679

Contig length: old 679, new 679
New start: 0