No. words: 1265; after pruning: 1239


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 12.4 (1,1:585)  574  0.00 0.00 0.00  BE489326Td08P088G12P034G031F1_042.ab1        1   582 (54)  C BE489326Td08P088G12P034G031R1_042.ab1   (43)   586     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C BE489326Td08P088G12P034G031R1_042.ab1   629 
   99    BE489326Td08P088G12P034G031F1_042.ab1    56 
  135  C BE489326Td08P088G12P034G031R1_042.ab1   495 
  255    BE489326Td08P088G12P034G031F1_042.ab1   212 
  263  C BE489326Td08P088G12P034G031R1_042.ab1   367 
  519    BE489326Td08P088G12P034G031F1_042.ab1   476 
  591  C BE489326Td08P088G12P034G031R1_042.ab1    39 
  599    BE489326Td08P088G12P034G031F1_042.ab1   556 
Contig length: old 679, new 679

Contig length: old 679, new 679
New start: 0