No. words: 1027; after pruning: 1001


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 7.8 (1,1:521)  418  0.00 0.00 0.24  BE490085Ld01P067E02P067E081F1_040.ab1       92   516 (80)  C BE490085Ld01P067E02P067E081R1_040.ab1   (0)   431     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1    BE490085Ld01P067E02P067E081F1_040.ab1     1 
  331  C BE490085Ld01P067E02P067E081R1_040.ab1   192 
  343    BE490085Ld01P067E02P067E081F1_040.ab1   343 
  355  C BE490085Ld01P067E02P067E081R1_040.ab1   168 
  363    BE490085Ld01P067E02P067E081F1_040.ab1   363 
  371  C BE490085Ld01P067E02P067E081R1_040.ab1   152 
  391    BE490085Ld01P067E02P067E081F1_040.ab1   391 
  395  C BE490085Ld01P067E02P067E081R1_040.ab1   128 
  399    BE490085Ld01P067E02P067E081F1_040.ab1   399 
  403  C BE490085Ld01P067E02P067E081R1_040.ab1   120 
  419    BE490085Ld01P067E02P067E081F1_040.ab1   419 
  427  C BE490085Ld01P067E02P067E081R1_040.ab1    96 
  431    BE490085Ld01P067E02P067E081F1_040.ab1   431 
  439  C BE490085Ld01P067E02P067E081R1_040.ab1    84 
  447    BE490085Ld01P067E02P067E081F1_040.ab1   447 
  459  C BE490085Ld01P067E02P067E081R1_040.ab1    64 
  471    BE490085Ld01P067E02P067E081F1_040.ab1   471 
  479  C BE490085Ld01P067E02P067E081R1_040.ab1    44 
  483    BE490085Ld01P067E02P067E081F1_040.ab1   483 
Contig length: old 596, new 596

Contig length: old 596, new 596
New start: 0