No. words: 2602; after pruning: 2550


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   85    0.0 12.6 (1,1:8)  570  0.00 0.00 0.00  BE490085Ld08P067E02P067E081R1_031.ab1       10   583 (107)    BE490085Ld08P067E02P067E081R1_019.ab1        2   575 (85) *
Merge:(0)    0    0.0 12.3 (1,1:0)  553  0.00 0.00 0.00  BE490085Ld08P067E02P067E081F1_031.ab1        1   556 (0)    BE490085Ld08P067E02P067E081F1_019.ab1        1   556 (140) *
Merge:(0)    1    0.0 10.7 (2,2:521)  509  0.00 0.19 0.19  BE490085Ld08P067E02P067E081F1_031.ab1        2   522 (34)  C BE490085Ld08P067E02P067E081R1_031.ab1   (169)   521     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       1        0
 1       1        0
85       1        0

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1574 nodes

 416 str. conn. components

Path
    1  C BE490085Ld08P067E02P067E081R1_031.ab1   690 
  114  C BE490085Ld08P067E02P067E081R1_019.ab1   569 
  130  C BE490085Ld08P067E02P067E081R1_031.ab1   561 
  134  C BE490085Ld08P067E02P067E081R1_019.ab1   549 
  154  C BE490085Ld08P067E02P067E081R1_031.ab1   537 
  170  C BE490085Ld08P067E02P067E081R1_019.ab1   513 
  178  C BE490085Ld08P067E02P067E081R1_031.ab1   513 
  186  C BE490085Ld08P067E02P067E081R1_019.ab1   497 
  478    BE490085Ld08P067E02P067E081F1_019.ab1   309 
  492  C BE490085Ld08P067E02P067E081R1_031.ab1   199 
  540    BE490085Ld08P067E02P067E081F1_031.ab1   371 
  629    BE490085Ld08P067E02P067E081F1_019.ab1   460 
  713    BE490085Ld08P067E02P067E081F1_031.ab1   544 
  717    BE490085Ld08P067E02P067E081F1_019.ab1   548 
Contig length: old 864, new 865

Contig length: old 865, new 865
New start: 0