No. words: 2713; after pruning: 2661


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.2 (1,1:511)  499  0.20 0.20 0.00  BE490085Ld09P067E02P067E081F1_017.ab1        3   512 (184)  C BE490085Ld09P067E02P067E081R1_017.ab1   (147)   511     1 *
Merge:(0)    1    0.0 10.0 (1,1:515)  505  0.00 0.19 0.00  BE490085Ld09P067E02P067E081F1_029.ab1        3   516 (153)  C BE490085Ld09P067E02P067E081R1_029.ab1   (175)   515     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 1       2        0

Offset
  1       2 

Pass 4
             Gap  Score    
 -695  -694  146 148    635     I -577- 57
Fail: (1)  635    0.0 2.6 (2,2:520)  117  0.00 0.00 0.00  BE490085Ld09P067E02P067E081R1_029.ab1      574   690 (0)    BE490085Ld09P067E02P067E081F1_017.ab1      579   695 (1)  

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        1

Gap   # merges  # failures
 size
635       0        1

Offset
  0       1 
  2       1 

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  250 nodes

 127 str. conn. components

Path
    1  C BE490085Ld09P067E02P067E081R1_017.ab1   658 
  410    BE490085Ld09P067E02P067E081F1_017.ab1   264 
  502  C BE490085Ld09P067E02P067E081R1_017.ab1   157 
  510    BE490085Ld09P067E02P067E081F1_017.ab1   364 
  522  C BE490085Ld09P067E02P067E081R1_017.ab1   137 
  526    BE490085Ld09P067E02P067E081F1_017.ab1   380 
Contig length: old 842, new 842

Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C BE490085Ld09P067E02P067E081R1_029.ab1   690 
  238    BE490085Ld09P067E02P067E081F1_029.ab1    64 
  242  C BE490085Ld09P067E02P067E081R1_029.ab1   449 
  354    BE490085Ld09P067E02P067E081F1_029.ab1   180 
  362  C BE490085Ld09P067E02P067E081R1_029.ab1   329 
  434    BE490085Ld09P067E02P067E081F1_029.ab1   260 
  458  C BE490085Ld09P067E02P067E081R1_029.ab1   233 
  466    BE490085Ld09P067E02P067E081F1_029.ab1   292 
  470  C BE490085Ld09P067E02P067E081R1_029.ab1   221 
  486    BE490085Ld09P067E02P067E081F1_029.ab1   312 
  498  C BE490085Ld09P067E02P067E081R1_029.ab1   193 
  514    BE490085Ld09P067E02P067E081F1_029.ab1   340 
  530  C BE490085Ld09P067E02P067E081R1_029.ab1   161 
  538    BE490085Ld09P067E02P067E081F1_029.ab1   364 
  554  C BE490085Ld09P067E02P067E081R1_029.ab1   137 
  566    BE490085Ld09P067E02P067E081F1_029.ab1   392 
  614  C BE490085Ld09P067E02P067E081R1_029.ab1    77 
  622    BE490085Ld09P067E02P067E081F1_029.ab1   448 
  638  C BE490085Ld09P067E02P067E081R1_029.ab1    53 
  646    BE490085Ld09P067E02P067E081F1_029.ab1   472 
Contig length: old 843, new 843

Contig length: old 842, new 842
New start: 0 

Contig length: old 843, new 843
New start: 0