No. words: 1560; after pruning: 1508


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:421)  412  0.24 0.24 0.00  BE490085Ld11P067E02P067E081F1_034.ab1        1   422 (178)  C BE490085Ld11P067E02P067E081R1_034.ab1   (150)   423     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    
 0  -537  209 213    91     S 0- 90
Fail: (1)   91    0.0 2.6 (2,1:386)  119  0.00 0.00 0.00  BE490085Ld11P067E02P067E081F1_034.ab1      478   596 (4)    BE490085Ld11P067E02P067E081R1_025.ab1       92   210 (0) *
 -176  -176  0 574    86     E -85- 0
Fail: (1)   86    0.0 2.0 (2,1:25)   90  0.00 0.00 0.00  BE490085Ld11P067E02P067E081R1_034.ab1      483   573 (0)    BE490085Ld11P067E02P067E081F1_025.ab1       87   177 (0) *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        2

Gap   # merges  # failures
 size
86       0        1
91       0        1

Offset
  0       2 

Read equivalence class histogram:
    1    2
    2    1

Chimera merges: 

Merge:(0)   86    0.0 2.0 (2,1:25)   90  0.00 0.00 0.00  BE490085Ld11P067E02P067E081R1_034.ab1      483   573 (0)    BE490085Ld11P067E02P067E081F1_025.ab1       87   177 (0) *
Merge:(0)   91    0.0 2.6 (3,1:386)  119  0.00 0.00 0.00  BE490085Ld11P067E02P067E081F1_034.ab1      478   596 (4)    BE490085Ld11P067E02P067E081R1_025.ab1       92   210 (0) *

Contig 1:  314 nodes

 161 str. conn. components

Path
    1  C BE490085Ld11P067E02P067E081F1_025.ab1   177 
    8  C BE490085Ld11P067E02P067E081R1_034.ab1   566 
  312    BE490085Ld11P067E02P067E081F1_034.ab1   161 
  660    BE490085Ld11P067E02P067E081R1_025.ab1   123 
  684    BE490085Ld11P067E02P067E081F1_034.ab1   533 
  712    BE490085Ld11P067E02P067E081R1_025.ab1   175 
  720    BE490085Ld11P067E02P067E081F1_034.ab1   569 
  740    BE490085Ld11P067E02P067E081R1_025.ab1   203 
  744    BE490085Ld11P067E02P067E081F1_034.ab1   593 
Contig length: old 751, new 751

Contig length: old 751, new 751
New start: 0