No. words: 2528; after pruning: 2476


Histogram of relative pair offsets, for read pairs with multiple alignments:
97     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.8 (1,1:429)  415  0.23 0.47 0.00  BE490085Ld13P067E02P067E081F1_065.ab1        1   429 (144)  C BE490085Ld13P067E02P067E081R1_065.ab1   (171)   431     1 *
Merge:(0)    6    0.0 6.2 (1,1:508)  449  2.98 0.20 0.00  BE490085Ld13P067E02P067E081F1_021.ab1        1   503 (194)  C BE490085Ld13P067E02P067E081R1_021.ab1   (146)   510     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 6       1        0

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    
 -572  -569  172 274    655     E -482- 172
Fail: (1)  655    0.0 1.9 (2,2:422)   86  0.00 0.00 0.00  BE490085Ld13P067E02P067E081R1_021.ab1      570   656 (0)    BE490085Ld13P067E02P067E081F1_065.ab1      484   570 (3)  
 -572  -669  172 174    628     S -572- 55
Fail: (1)  628    0.0 1.4 (2,2:522)   99  5.13 0.00 0.00  BE490085Ld13P067E02P067E081F1_021.ab1      579   695 (2)    BE490085Ld13P067E02P067E081R1_065.ab1      486   602 (0)  

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        2

Gap   # merges  # failures
 size
628       0        1
655       0        1

Offset
  0       2 

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  208 nodes

 106 str. conn. components

Path
    1  C BE490085Ld13P067E02P067E081R1_065.ab1   602 
  496    BE490085Ld13P067E02P067E081F1_065.ab1   323 
Contig length: old 745, new 746

Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C BE490085Ld13P067E02P067E081R1_021.ab1   656 
  642    BE490085Ld13P067E02P067E081F1_021.ab1   495 
Contig length: old 844, new 844

Contig length: old 746, new 746
New start: 0 

Contig length: old 844, new 844
New start: 0 
S Change at: 618; seg lengths: entry 4, contig 4
S Change at: 646; seg lengths: entry 1, contig 1