No. words: 1517; after pruning: 1491


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:595)  571  0.00 0.17 0.00  BE490274Ld02P129C04P129C101F1_037.ab1        1   596 (176)  C BE490274Ld02P129C04P129C101R1_037.ab1   (148)   597     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C BE490274Ld02P129C04P129C101R1_037.ab1   745 
  245    BE490274Ld02P129C04P129C101F1_037.ab1    96 
  249  C BE490274Ld02P129C04P129C101R1_037.ab1   497 
  269    BE490274Ld02P129C04P129C101F1_037.ab1   120 
  273  C BE490274Ld02P129C04P129C101R1_037.ab1   473 
  285    BE490274Ld02P129C04P129C101F1_037.ab1   136 
  293  C BE490274Ld02P129C04P129C101R1_037.ab1   453 
  305    BE490274Ld02P129C04P129C101F1_037.ab1   156 
  417  C BE490274Ld02P129C04P129C101R1_037.ab1   329 
  421    BE490274Ld02P129C04P129C101F1_037.ab1   272 
  441  C BE490274Ld02P129C04P129C101R1_037.ab1   305 
  453    BE490274Ld02P129C04P129C101F1_037.ab1   304 
  465  C BE490274Ld02P129C04P129C101R1_037.ab1   281 
  473    BE490274Ld02P129C04P129C101F1_037.ab1   324 
  481  C BE490274Ld02P129C04P129C101R1_037.ab1   265 
  509    BE490274Ld02P129C04P129C101F1_037.ab1   360 
  517  C BE490274Ld02P129C04P129C101R1_037.ab1   229 
  553    BE490274Ld02P129C04P129C101F1_037.ab1   404 
  565  C BE490274Ld02P129C04P129C101R1_037.ab1   181 
  585    BE490274Ld02P129C04P129C101F1_037.ab1   436 
  589  C BE490274Ld02P129C04P129C101R1_037.ab1   157 
  605    BE490274Ld02P129C04P129C101F1_037.ab1   456 
  617  C BE490274Ld02P129C04P129C101R1_037.ab1   129 
  625    BE490274Ld02P129C04P129C101F1_037.ab1   476 
  681  C BE490274Ld02P129C04P129C101R1_037.ab1    65 
  689    BE490274Ld02P129C04P129C101F1_037.ab1   540 
Contig length: old 921, new 921

Contig length: old 921, new 921
New start: 0