No. words: 1516; after pruning: 1490


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:595)  566  0.00 0.34 0.00  BE490274Ld03P129C04P129C101F1_035.ab1        1   595 (176)  C BE490274Ld03P129C04P129C101R1_035.ab1   (148)   597     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C BE490274Ld03P129C04P129C101R1_035.ab1   745 
  207    BE490274Ld03P129C04P129C101F1_035.ab1    57 
  223  C BE490274Ld03P129C04P129C101R1_035.ab1   523 
  235    BE490274Ld03P129C04P129C101F1_035.ab1    85 
  239  C BE490274Ld03P129C04P129C101R1_035.ab1   507 
  243    BE490274Ld03P129C04P129C101F1_035.ab1    93 
  283  C BE490274Ld03P129C04P129C101R1_035.ab1   463 
  291    BE490274Ld03P129C04P129C101F1_035.ab1   141 
  299  C BE490274Ld03P129C04P129C101R1_035.ab1   447 
  307    BE490274Ld03P129C04P129C101F1_035.ab1   157 
  407  C BE490274Ld03P129C04P129C101R1_035.ab1   339 
  411    BE490274Ld03P129C04P129C101F1_035.ab1   261 
  439  C BE490274Ld03P129C04P129C101R1_035.ab1   307 
  455    BE490274Ld03P129C04P129C101F1_035.ab1   305 
  463  C BE490274Ld03P129C04P129C101R1_035.ab1   283 
  471    BE490274Ld03P129C04P129C101F1_035.ab1   321 
  491  C BE490274Ld03P129C04P129C101R1_035.ab1   255 
  559    BE490274Ld03P129C04P129C101F1_035.ab1   409 
  563  C BE490274Ld03P129C04P129C101R1_035.ab1   183 
  575    BE490274Ld03P129C04P129C101F1_035.ab1   425 
  579  C BE490274Ld03P129C04P129C101R1_035.ab1   167 
  599    BE490274Ld03P129C04P129C101F1_035.ab1   449 
  607  C BE490274Ld03P129C04P129C101R1_035.ab1   139 
  631    BE490274Ld03P129C04P129C101F1_035.ab1   481 
  635  C BE490274Ld03P129C04P129C101R1_035.ab1   111 
  663    BE490274Ld03P129C04P129C101F1_035.ab1   513 
Contig length: old 920, new 921

Contig length: old 921, new 921
New start: 0